Investigation of neuronal pathfinding and construction of artificial neuronal networks on 3d-arranged porous fibrillar scaffolds with controlled geometry

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Investigation of neuronal pathfinding and construction of artificial neuronal networks on 3d-arranged porous fibrillar scaffolds with controlled geometry"


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ABSTRACT Herein, we investigated the neurite pathfinding on electrospun microfibers with various fiber densities, diameters, and microbead islands, and demonstrated the development of 3D


connected artificial neuronal network within a nanofiber-microbead-based porous scaffold. The primary culture of rat hippocampal embryonic neurons was deposited on geometry-controlled


polystyrene (PS) fiber scaffolds while growth cone morphology, neurite outgrowth patterns, and focal adhesion protein expression were cautiously examined by microscopic imaging of


immunostained and live neuronal cells derived from actin-GFP transgenic mice. It was demonstrated that the neurite outgrowth was guided by the overall microfiber orientation, but the


increase in fiber density induced the neurite path alteration, thus, the reduction in neurite linearity. Indeed, we experimentally confirmed that growth cone could migrate to a neighboring,


but, spatially disconnected microfiber by spontaneous filopodium extrusion, which is possibly responsible for the observed neurite steering. Furthermore, thinner microfiber scaffolds showed


more pronounced expression of focal adhesion proteins than thicker ones, suggesting that the neuron-microfiber interaction can be delicately modulated by the underlying microfiber geometry.


Finally, 3D connected functional neuronal networks were successfully constructed using PS nanofiber-microbead scaffolds where enhanced porosity and vertical fiber orientation permitted cell


body inclusion within the scaffold and substantial neurite outgrowth in a vertical direction, respectively. SIMILAR CONTENT BEING VIEWED BY OTHERS 4D PRINTING OF STRETCHABLE


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MICRO 3D NEURONAL CULTURES Article Open access 01 September 2021 INTRODUCTION Electrospinning is a simple but versatile technique for fabricating micro/nanofibers, and both single fibers and


entangled fibrillar scaffolds have been extensively exploited for energy storage devices1, 2, sensors3, 4, and biomedical applications5,6,7,8,9. Beside the relative simplicity and


scalability in fabrication, one common reason for its popularity is that electrospun fibers exhibit large porosity as well as high surface area-to-volume ratio, which are not straightforward


to generate by other conventional bottom-up or top-down fabrication methods. Particularly, structural parameters of electrospun fiber scaffolds (i.e., fiber diameter and pore size) are


typically in the range of 0.1 to 10 micrometers, which is comparable to the length scale of single cell processes such as cellular alignment, migration, proliferation, etc10,11,12,13,14. In


fact, many researchers have used electrospun fibers as a culture platform for studying various types of cells including stem cells. Previous studies showed that the mechanical15, 16,


geometrical17, and chemical properties18, 19 of electrospun fiber scaffolds can affect several different types of apparent cell behaviors and protein expression levels. After it was reported


that neuronal processes (i.e., neurites) can follow the directionality of underlying micro/nanofibers, electrospun fibers have been widely used as an artificial culture substrate for


various biological and biomedical studies20,21,22. In particular, peripheral nerve guidance and combinatorial approaches based on biodegradable polymer fibers have shown their strong


potential for treating human nervous systems in the future8, 23. Apart from neural engineering and biomedical applications, electrospun fibers can be employed as a substrate platform


beneficial for studying the fundamental aspects of neurite outgrowth not only in the peripheral but also central nervous system (CNS), since cellular contact points are confined on the


surface of a pseudo-one-dimensional (1D) structure of electrospun micro/nanofiber. Therefore, it is conceivable that, in principle, neurite directionality and synaptic connection could be


designed _de novo_ by the overall geometry of electrospun fiber scaffolds used for neuronal culture. Several research groups have already demonstrated that the axonal guidance is typically


in parallel with the electrospun fiber alignment24,25,26. On the contrary, it was also reported that axonal guidance could occur in the direction perpendicular to aligned fibers27. These


apparently contradictory results imply that there exists a certain possibility that neurite pathfinding and outgrowth may be guided not only by ‘static’ environmental factors, i.e., the


underlying micro/nanofiber directionality, but also by ‘dynamic’ cellular factors, i.e., growth cone movement and its interaction with extracellular structures. Nonetheless, most of the


previous studies on neuronal culture on electrospun fibrillar scaffolds focused on the guidance of peripheral nerve growth on the parallelly-aligned electrospun fibers, which can be prepared


by electrospinning on rotating metallic drum28 or parallelized collecting electrodes29. Note that these reports mainly described the formation of neuronal circuit along the aligned


direction of underlying fiber, where the fiber alignment was considered as a critical factor for efficient generation of neuronal circuit. Unfortunately, there exist only few studies on


CNS-derived neurons on electrospun micro/nanofibers although such a fibrillary network can be employed to define 3D artificial neuronal networks which could be useful in the field of


fundamental neuroscience and/or developmental neurobiology. Moreover, it has not been clarified how neurite outgrowth of CNS neurons can be modulated by structural parameters of underlying


fibrillar scaffolds, for instance, fiber diameter, density, porosity, etc. In this study, we fabricated various types of free-standing fibrillar scaffolds which consist of entangled


electrospun polystyrene (PS) micro/nanofibers with controlled geometric parameters, and investigated growth cone dynamics and neuronal cell morphology by fluorescence microscopy in


combination with time-lapse live imaging. Particularly, electrospun fibers were visualized by confocal reflection microscopy (CRM), which permits the overlay of neuronal processes and


micro/nanofibers, thus, the microscopic examination of neuron-fiber interaction in terms of growth cone morphology and focal adhesion expression using fibrillar scaffolds with distinct fiber


density and diameter. Finally, 3D connected artificial neuronal networks were constructed within a nanofiber-microbead-based porous scaffold where the enhanced porosity and vertical fiber


orientation enabled cell body inclusion within the scaffold and substantial neurite outgrowth in a vertical direction, respectively. RESULTS PREPARATION OF FIBRILLARY SCAFFOLDS WITH


CONTROLLED GEOMETRY AND MICROBEAD INCLUSION VIA ELECTROSPINNING Figure 1(a) shows a schematic diagram of electrospinning apparatus employed in this study. Fiber density, diameter, and


microbead inclusion were judiciously controlled by adjusting the experimental condition of electrospinning. First, the areal density of electrospun micro/nanofibers was altered by inserting


paraffin films between a metal needle and a collector plate. The increase in overall dielectric film thickness reduced the local flux of electrospun fibers, leading to the decrease of


resultant fiber density, while the fiber diameter was nominally fixed as shown in the corresponding optical microscopy images (Fig. 1(b)). Next, the diameter of electrospun fiber was


manipulated by varying the concentration of PS solution. Figure 1(c) and (e) show that less concentrated PS solutions yield fibers with thinner diameters. This result can be attributed to


the reduced viscoelasticity of PS solution, leading to the facilitated deformation of a polymer solution drop at the given high electric field, thus, the decreased diameter of electrospun


fiber. Interestingly, this proportionality ceased around 20 wt% of PS concentration, where fiber diameters were not relatively uniform as shown in Fig. 1(d). The resultant electrospun


scaffold contained a mixture of microscale beads and nanofiber threads30, which showed much higher porosity (i.e., larger interfiber spacing) than electrospun microfibers prepared using the


solutions of higher ( > 20%) PS concentration (Fig. 1(f)). EXAMINATION OF GROWTH CONE MORPHOLOGY AND NEURITE DIRECTIONALITY First of all, the primary culture of rat hippocampal embryonic


(E18) neurons was conducted on various fibrillar scaffolds after poly-D-lysine treatment and the biocompatibility was examined (Fig. S1, Supporting Information). Note that the viabilities of


neuronal cells on all PS fibrillary scaffolds were comparable to that on flat PS dish at 3 DIV although the prolonged culture was more viable on flat dish, possibly, due to the facile


removal of undesired cell debris during the medium exchange. Next, for the detailed investigation of neurite outgrowth dynamics on a geometry-controlled pseudo-1D microfiber, growth cone or


a leading edge of axon, which determines neuronal elongation in response to external stimuli, was visualized on PS dish and microfibers via actin labeling. Figure 2(a) and (b) reveal that


there exists a substantial difference in growth cone morphology between two substrates. In the case of electrospun microfiber mesh, most of the growth cones were concentrated at the distal


part of neurites with relatively small area compared with those on a flat PS dish. We argue that the cylinder-like electrospun fiber structure confines most of the pathfinding activities of


growth cone along the underlying fiber direction, leading to the reduction in actin coverage area. Next, after primary embryonic neurons were cultured on porous fibrillar scaffolds with


three different fiber densities (i.e., high, medium, and low) for 7 DIV, cells were immunostained with a microtubule marker, while electrospun microfibers themselves were simultaneously


visualized with CRM. As shown in Fig. 2(c) and (d), the relatively high fiber density mesh exhibited the statistically meaningful mitigation in neurite outgrowth (linear) directionality (see


Fig. 2(e) for its schematic definition). This result suggests that the more frequent crossing-over among electrospun fibers, especially, at the high-fiber-density scaffold, can induce


neurite to switch to another neighboring fiber, leading to the decrease in the overall neurite directionality. NEURONAL LOCOMOTION ON FIBRILLARY SCAFFOLD To further understand the locomotion


and steering of growth cone on spatially-separated micro/nanofibers, paraformaldehyde-fixed neurons were carefully monitored, particularly, on curved neurite regions. The microscopic images


of immunostained neurons (Fig. 3(a)) show two distinct types of freestanding curved neurites hanging over spatially-separated microfibers: crossing fibers with an abrupt angle vs. parallel


fibers with a small spacing. First, neurites could be partially detached from crossing microfibers with an abrupt angle (_θ_) (Fig. 3(a) upper). As depicted in Fig. 3(b), the neurite


detachment could be assisted by the traction force (_T_ _trac_ ) of growth cone because the detaching force is proportional to _T_ _trac_ _cos(θ/2)_ while the elastic property of microtubule


also impedes its bending31. Second, neurite could spontaneously migrate to another microfiber which is in parallel with the direction of neurite outgrowth with relatively small spacing


(Fig. 3(a) lower). In this case, the growth cone’s switch to another fiber could be enabled by filopodium elongation as schematically depicted in Fig. 3(c). To verify the roll of traction


force during this course, the non-muscle myosin II inhibition assay with blebbistain was conducted. As shown in Fig. 3(d) inset, the length of detached (free-standing) neurite is compared


between 50 μM blebbistatin- and DMSO-treated (control) neurons. The total numbers of free-standing neurites of blebbistatin- and DMOS-treated neurons are 158 and 145, respectively.


Remarkably, the majority of neurons where the expression of non-muscle myosin II was inhibited by blebbistatin treatment, exhibited relatively short free-standing neurites compared to the


control group. This evidence suggests that the detachment of neurites at the given situation could be assisted by traction force. To investigate the existence of spontaneous growth cone


migration, time-lapse fluorescence microscopy was performed on actin-GFP transgenic mice derived embryonic hippocampal neurons. As demonstrated in Fig. 3(e) (see also Fig. S2, Supporting


Information), growth cone was actively searching for its pathway by scanning not only the surface of electrospun fibers but also the substrate-free interfiber region. Occasionally, the


spontaneous elongation of filopodium leads to the eventual migration to another fiber through the interfiber void (i.e., no fiber region). The above-mentioned behaviors of neuronal growth


cone on the electrospun fibrillar scaffold are very similar to those of worm on tree branches, implying that growth cone dynamic is mechanically robust and, therefore, can maintain its


structural integrity even in the absence of adhesion support. INVESTIGATION OF FOCAL ADHESION PROTEIN EXPRESSION In parallel, the adhesion of neuronal cells onto the surface of electrospun


micro/nanofibers was also investigated. Focal adhesion is a protein complex which forms a junction between cytoskeleton and extracellular matrix. The spatial coverage and expression level of


focal adhesion-related protein complexes are influenced by mechanical rigidity, ligand density, and type of extracellular matrix32,33,34,35,36,37. For instance, the expression level of


vinculin, a type of focal adhesion proteins, is determined by the interaction between myosin motor-mediated traction force and elastic modulus of adhesion site to integrin38, and a stiff


substrate triggers strong myosin traction force so that the vinculin expression level is substantially increased33. Remarkably, Fig. 4(a)–(d) show that the increase of electrospun fiber


diameter leads to the reduction of focal adhesion protein level. In contrast, the neurons cultured on thinner electrospun fiber mesh exhibited higher fluorescence intensity of vinculin


labeling throughout the whole axon than those cultured on thicker electrospun fiber mesh. One may expect the reduced vinculin level on thinner microfibers due to their low stiffness compared


to thicker microfibers39 (Fig. S3, Supporting Information). Note that the modulation of fiber stiffness is more effectively controlled by varying its diameter rather than intrinsic


modulus39,40,41. To address this apparent contradiction, we speculate that the self-strained focal adhesion might be involved especially on thinner fibers as schematically shown in Fig. 


4(e). Due to the elastic modulus of neurite itself, its adhesion to the curved surface of microfiber generates the restoring force of neurite cylinder itself at the interacting surface


between neurite and electrospun fiber. Therefore, if electrospun microfiber was much thicker than the curvature of neurite, the tension could be more equally distributed throughout the focal


adhesion complex, and the force exerted on integrin could be moderated, leading to the decrease in vinculin expression. In fact, the detailed vinculin expression was carefully examined to


understand the correlation between neurite contact area and fiber diameter (Fig. 4(f) to (i)). The statistical analyses of spatial distributions and intensity profiles of vinculin at


different fiber diameters indicate that while the underlying fiber diameter minimally affects the contact area or lateral spreading of neurite, the vinculin expression is enhanced by the


reduction of fiber thickness. CONSTRUCTION OF 3D ARTIFICIAL NEURONAL NETWORK ON HIGHLY POROUS NANOFIBER-MICROBEAD SCAFFOLD Until now, we have investigated neuronal dynamics demonstrated on


electrospun fiber surface without considering vertical neuronal outgrowth. Typically, the overall fiber orientation in the conventional electrospun micro/nanofiber scaffold is in parallel


with the collecting metal plate. Therefore, neurons cultured on electrospun fibrillary scaffolds mostly display a majority of cell bodies sitting on top of mesh and neurite extension


confined in parallel with the horizontal plane, however, rarely exhibit neurite outgrowth in a vertical direction (Fig. 5(a)). In contrast, the neuronal culture on electrospun PS


nanofiber-microbead scaffold exhibited several features of 3D-like neuronal culture, for instance, cell inclusion inside the scaffold and vertical neurite outgrowth (Fig. 5(b)), although the


neuronal directionality along the fiber was not significantly different between fiber-only and nanofiber-microbead scaffolds (Fig. S4, Supporting Information). Note that in comparison with


the electrospun fiber-only scaffold, the incorporation of microbeads into fibrillar mesh enables both enlarged free volume and enhanced vertical fiber orientation (Fig. 5(c)), resulting in


cell body penetration inside scaffold and vertical neurite guidance (Fig. 5(d)) with large inter-fiber spacing, respectively. Finally, Fig. 5(e)–(g) shows the expression of synaptic proteins


(e.g., synapsin) and the activity of neuronal firing (e.g., calcium signaling) on bead-nanofiber scaffold. Furthermore, the neurons on microbead-nanofiber scaffold showed the distinct


functional activity compared to those on PS dish (Fig. S5, Supporting Information)42,43,44,45. These results suggest the future potential of the 3D-like neuronal culture for artificial


neuronal network formation and other related studies. DISCUSSION Due to the contact cue from electrospun fibers, the pathfinding process of the cultured neuron is significantly influenced by


the supporting fiber geometry. However, as shown in our research, such a contact-derived guidance effect can be moderated by increasing the fiber density up to a certain degree because the


spontaneous elongation of filopodium can induce the migration of grown cone, thus, neurite to another neighboring fiber. To our knowledge, we report the experimental verification of such


through-space neurite migration for the first time. Therefore, neurite orientation is not only affected by scaffold geometry 46, 47, but also by its own active dynamics. This finding may be


exploited for varying neurite outgrowth directions beyond the contacting fiber orientation and, thereby, enriching the morphology/connectivity of resultant artificial neuronal network, which


is one of the most important factors to determine the neuronal network function. In the peripheral nervous system, directionality is one of the important factors for the effective


propagation of nerve signal. In the case of CNS, however, network connectivity has been attributed to the origin of higher-order brain functions48. Therefore, a variety of _in vitro_ 3D


models emulating _in vivo_ neuronal networks have been proposed by many researchers. As shown in Fig. 5(a), electrospun micro/nanofiber scaffolds typically confine the overall neuronal


network within ~10 μm thick mesh from the top surface of culture because most of the fibers exhibit the horizontal orientation as well as low porosity (Fig. 1(c) and (f)). In contrast to the


conventional fiber-only scaffolds with 2D-like network morphology, the electrospun nanofiber-microbead scaffold not only contains more off-horizontal fiber orientations (Fig. 5(c)) but also


exhibit substantially increased porosity (Fig. 1(f)) compared to fiber-only scaffolds. Indeed, microbead incorporation assisted the inclusion of neuronal bodies below the culture surface


(Fig. 5(b)) and the enhanced vertical (z-axis) growth of neurite down to 44 μm from the top culture surface (Fig. 5(d)). Furthermore, it is noteworthy that the enlarged porosity permitted


the co-culture of neurons and glia with larger number of cells inside the scaffold (see Fig. S6 and Movie S1–3, Supporting Information). Considering that in the real brain tissue, there


exist more supporter cells (i.e., glia) than neurons48, such a highly-packed neuronal co-culture could be beneficial for emulating the brain tissue environment, thus, addressing the


fundamental neuroscience questions. CONCLUSIONS In this work, the investigation of neuronal pathfinding on geometry-defined fibrillar scaffolds revealed that topographical factors of


electrospun fibers significantly influence neuronal cell morphology and outgrowth pattern. We observed that neurites outgrowth followed the overall microfiber direction, but, the increase in


fiber density reduced the neurite linearity, in which course growth cone promoted neurite migration to a spatially-separated fiber. Moreover, we discovered that neurons cultured on


lower-diameter fibers exhibited higher expression of vinculin, implying that the geometrical parameters of fibers can be used for controlling the adhesion of neurites on underlying


scaffolds. Finally, the artificial 3D neuronal network was successfully constructed using electrospun nanofiber-microbead scaffolds, which permitted substantially enhanced porosity, thus,


cell body inclusion inside the scaffold and, simultaneously, noticeable neurite penetration in a vertical direction. Our results suggest that electrospun fibrillar scaffolds with


well-defined fiber geometry and microbead inclusion may function as a versatile culture platform for various types of artificial 3D neuronal networks. MATERIALS AND METHODS FABRICATION AND


CHARACTERISATION OF POLYSTYRENE ELECTROSPUN FIBERS Polystyrene (PS) at 20 wt%, 30 wt%, 38 wt%, and 46 wt% (Sigma-Aldrich, Mw = 280,000) in DMF (Sigma-Aldrich, 99.8%) was stirred overnight.


Dissolved transparent PS precursor was loaded on 3 mL syringe and 21 G metal needle (BD) was retracted in front of the syringe. The syringe was fixed in a single syringe infusion pump (KD


Scientific) and placed on top of collecting metal sheet. DC high voltage generator (Chungpa EMT) supplied voltage through sheathed conducting cable that was connected to the metal needle and


collecting grid. The supplying voltage and infusion speeds were 18 kV and 0.1 mL, respectively. The distance between the metal needle and collecting metal grid was 20 cm. After the spinning


process, the PS electrospun fiber was treated with oxygen plasma treatment for 1 min to make the surface of electrospun PS fiber hydrophilic. The electrospun PS fibers were immersed into


poly-D-lysine (Sigma-Aldrich) solution (0.1 mg/mL), dissolved in 50 mM of boric acid hydroxide (Sigma-Aldrich) solution overnight, and then washed with distilled water intensively before


cell seeding. Ethanol was used as a swelling liquid to measure the swelling ratio due to the amphiphilic property and low surface energy, which minimizes overestimation of swollen liquid.


The diameter and surface morphology of PS fiber were characterized by a field-emission scanning electron microscope (FE-SEM, JEOL 6301 F, Japan). Platinum (Pt) coating was needed prior to


SEM characterization to avoid image distortion. PRIMARY CULTURE OF RAT HIPPOCAMPAL EMBRYONIC NEURONS Rat embryos (embryonic day 18, E18) was sacrificed and the hippocampal region was


dissected in HBSS (Hank’s buffer salt solution, Sigma-Aldrich) medium under a stereomicroscope. The hippocampal tissue was then dipped into 140 μL of papain (Worthington Biochem, Corp) and


30 μL of DNase (30 units, Invitrogen) in 20 mL of HBSS. After 20 min of incubation, HBSS was removed and 10% (v/v) FBS containing HBSS was added to block enzymatic activity. The medium was


replaced with HBSS and dissociated mechanically by pipetting in 30 μL DNase (30 units) in 2 mL HBSS. Pipetting was executed about 50 times until there was no visible supernatant. The


dissociated hippocampal neuron was seeded on poly-D-lysine coated electrospun PS fiber with plating medium (Invitrogen) with 10% FBS. After 1 hour of incubation, the medium was changed to


neurobasal medium (Invitrogen). The culture medium was replaced every three days. All the animal experiments were and protocols were approved by the Institutional Animal Care Use Committee


of the School of Life Sciences, Gwangju Institute of Science and Technology and carried out in accordance with their approved guidelines (IACUC GIST- 2014-06). IMMUNOCYTOCHEMISTRY AND


IMAGING Neurons cultured _in vitro_ for 5 days (5 DIV), 7 days (7 DIV), and 14 days (14 DIV) on electrospun PS fiber were fixed using paraformaldehyde for 30 min and treated with Triton


X-100 (Sigma-Aldrich) for 10 min. Bovine serum albumin (BSA, 10%) was used to block the non-specific binding for 40 min. Cellular proteins for β3-tubulin, axon, dendrite, vinculin,


synaptophysin, and GFAP were stained with rabbit anti-tuj1 (1:40001, Abcam), mouse monoclonal anti-tau (1:200, SCBT), rabbit polyclonal anti-MAP2 (1:200, SCBT), mouse monoclonal


anti-vinculin (1:200, SCBT), rabbit polyclonal anti-synaptophysin (1:1000, Abcam ab68851), and chicken polyclonal anti-GFAP (1:1000, Abcam ab4674) in 3% BSA, respectively. The samples were


stored at 4 °C for 1 day and then washed with PBS three times for 15 min each. The following secondary antibodies were used- anti-rabbit Alexa Fluor 405 (1:10001, Invitrogen), anti-mouse


Alexa Fluor 488 (1:1000, Invitrogen), anti-rabbit Alexa Fluor 488 (1:1000, Invitrogen), anti-mouse Alexa Fluor 543 (1:1000, Invitrogen), anti-rabbit Alexa Fluor 543 (1:1000, Invitrogen),


anti-mouse Alexa Fluor 635 (1:1000, Invitrogen), and anti-chicken Alexa Fluor 635 (1:1000, Invitrogen). The actin filaments were stained with Alexa Fluor 488 - conjugated phalloidin (1:200,


Lonza Group Ltd). The sample was stored at 4 °C for 12 hours and then washed with PBS three times for 15 min each. The nuclei were stained immediately before imaging with 0.1 μg/mL of DAPI


(Invitrogen). IMAGING AND DATA ANALYSIS Upright confocal microscope (Olympus BX61WI) was used to investigate the neuronal morphology and protein expression. Confocal reflection mode (CRM)


revealed non-labelled electrospun PS fiber by opening excitation filter. All confocal images were taken using 20× water dipping objective lens (XLUMPLFLN-W, Olympus). The synaptophysin was


imaged by 60× water dipping lens (LUMFLN 60XW, Olympus). The fluorescence intensity was calculated by subtracting mean fluorescence of background reading from integrated fluorescence


intensity of the selected cell and then multiplying it with the area of selected cell. Measurement of actin distribution, fluorescence intensity, neuronal straightness, fiber diameter, and


fiber coverage was performed using ImageJ (NIH). The fiber coverage for low density, middle density, and high density correspond to 10~35%, 35~55% and 55~95%, respectively. The fiber density


was calculated by measuring covering ratio of electrospun fiber from the CRM image. Statistical significance was evaluated by pairwise-t-test method built in statistical programming


language R. All of the error bars denotes standard error of the mean. LIVE CELL IMAGING OF RAT HIPPOCAMPAL EMBRYONIC NEURONS ON ELECTROSPUN PS FIBER To interrogate neuronal dynamics on PS


fiber, hippocampal neurons from actin-GFP transgenic mice were employed. The primary culture protocol used was the same as that for rat hippocampal neuron culture. The live cell imaging for


neuronal dynamics was performed under live cell imaging chamber (LCI, South Korea) installed on the upright confocal microscope. CALCIUM IMAGING 5 μg of Oregon Green™ 488 BAPTA-1 was


dissolved in 20% (v/v) Pluronic F-127 containing 1 μL of dimethyl sulfoxide (DMSO) solution and, then, mixed with neurobasal medium. Subsequently, the cell-seeded scaffold was transferred


into the resultant solution. fter 10-min incubation, the calcium dye-containing medium was replaced by the original culture medium and incubated for 10 minutes before imaging. The time-lapse


calcium imaging was executed inside the live cell imaging chamber (LCI, South Korea). The frame rate of image recording was either 22 or 33 fps (frames-per-second) depending on the signal


quality at minimum light intensity. The fluorescent calcium signals (ΔF/F) were calculated using the following equation. $$\frac{{\rm{\Delta


}}F}{F}=\frac{current\,fluorescence\,intensity-lowest\,fluorescence\,intensity}{lowest\,fluorescence\,intentsity}.$$ LIVE/DEAD ASSAY 2 μL of ethidium homodimer-1 solution (Invitrogen) and 1


μL of calcein AM solution (Invitrogen) were mixed with 3 mL of PBS, and the final mixture was transferred to the culture dish containing the designated neuronal culture, immediately after


the existing medium was removed. BLEBBISTATIN ASSAY One day after cell seeding, the culture medium was replaced by the blebbistatin (Sigma-Aldrich)-containing medium (50 μM), and the control


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Download references ACKNOWLEDGEMENTS This work was financially supported by the GIST Research Institute (GRI) in 2017 and also by the Pioneer Research Center Program through the National


Research Foundation of Korea funded by the Ministry of Science, ICT, and Future Planning (2012-0009583 and 2012–0009664). AUTHOR INFORMATION Author notes * Seyeong Lee Present address: Korea


Institute of Energy Research (KIER), 152 Gajeong-ro, Yuseong-gu, Daejeon, 34129, Republic of Korea AUTHORS AND AFFILIATIONS * School of Materials Science and Engineering, Gwangju Institute


of Science and Technology, 123 Cheomdan-gwagiro, Buk-gu, Gwangju, 61005, Republic of Korea Dongyoon Kim, Seong-Min Kim, Seyeong Lee & Myung-Han Yoon Authors * Dongyoon Kim View author


publications You can also search for this author inPubMed Google Scholar * Seong-Min Kim View author publications You can also search for this author inPubMed Google Scholar * Seyeong Lee


View author publications You can also search for this author inPubMed Google Scholar * Myung-Han Yoon View author publications You can also search for this author inPubMed Google Scholar


CONTRIBUTIONS M.-H.Y. conceived and supervised the project. D.K., S.-M.K. and S.L. carried out the experiments and the data analysis. D.K., and M.-H.Y. wrote the manuscript. All authors


discussed the results and commented on the manuscript. CORRESPONDING AUTHOR Correspondence to Myung-Han Yoon. ETHICS DECLARATIONS COMPETING INTERESTS The authors declare that they have no


competing interests. ADDITIONAL INFORMATION PUBLISHER'S NOTE: Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.


ELECTRONIC SUPPLEMENTARY MATERIAL MOVIE S1 MOVIE S2 MOVIE S3 SUPPORTING INFORMATION RIGHTS AND PERMISSIONS OPEN ACCESS This article is licensed under a Creative Commons Attribution 4.0


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http://creativecommons.org/licenses/by/4.0/. Reprints and permissions ABOUT THIS ARTICLE CITE THIS ARTICLE Kim, D., Kim, SM., Lee, S. _et al._ Investigation of neuronal pathfinding and


construction of artificial neuronal networks on 3D-arranged porous fibrillar scaffolds with controlled geometry. _Sci Rep_ 7, 7716 (2017). https://doi.org/10.1038/s41598-017-08231-3 Download


citation * Received: 15 February 2017 * Accepted: 06 July 2017 * Published: 10 August 2017 * DOI: https://doi.org/10.1038/s41598-017-08231-3 SHARE THIS ARTICLE Anyone you share the


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